COVID-19: S-gene AA

Annotation: 5/6: Obtain coding sequences of S proteins from a diverse group of coronaviruses. Generate amino acid alignment to assess conservation of the polymorphic location.

StepAnnotation
Step 1: Input dataset
select at runtime
Step 2: transeq
Output dataset 'output' from step 1
Frame 1
Standard
Empty.
No
No
No
FASTA (m)
Step 3: MAFFT
Output dataset 'out_file1' from step 2
Amino acids
fftns
0.123
1.53
do not adjust direction
No matrix
False
False
FASTA
Step 4: tranalign
Output dataset 'output' from step 1
Output dataset 'outputAlignment' from step 3
Standard
FASTA (m)